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Posts
GrENE-net–ing … in progress …
Published:
Despite the challenges that 2020 brought, our lab in the Carnegie Department of Plant Biology at Stanford, has been working to process the GrENE-net samples, so we thought we’d share some pictures with landmark events!
GrENE-net is growing up!
Published:
90 enthusiastic researchers and 40 institutions, 45 sites, 12 replicate plots per site, ~5 million seeds distributed and sown. This is how GrENE-net started. A globally distributed experiment to study how the plant species Arabidopsis thaliana may genetically evolve to different climates.
And the first flower price goes to …
Published:
About one year after the official launch of GrENE-net, in Darwin’s 2017 birthday, the first flowers of this globally distributed evolution experiment just opened.
The founder seed mix
Published:
Ever wondered how some million Arabidopsis thaliana seeds look like? (see below)
45 experimental evolution sites
Published:
90 researchers and 40 institutions, 45 sites, 12 replicate plots per site, ~5 million seeds distributed and sown. This is the start of GrENE-net. A globally distributed experiment to study how the plant species Arabidopsis thaliana may genetically evolve to different climates.
portfolio
publications
grenepipe: A flexible, scalable, and reproducible pipeline to automate variant and frequency calling from sequence reads
Published in Bioinformatics, 2022
Recommended citation: grenepipe: A flexible, scalable, and reproducible pipeline to automate variant and frequency calling from sequence reads Czech, L., Exposito-Alonso, M. Bioinformatics (2022) https://doi.org/10.1093/bioinformatics/btac600 https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btac600/6687127
Monitoring rapid evolution of plant populations at scale with Pool-Sequencing
Published in bioRxiv, 2022
Recommended citation: Czech, Lucas; Peng, Yunru; Spence, Jeffrey P; Lang, Patricia L M; Bellagio, Tatiana; Hildebrandt, Julia; Fritschi, Katrin; Schwab, Rebecca; Rowan, Beth A; GrENE-net consortium; Weigel, Detlef; Scheepens, J F; Vasseur, François; Exposito-Alonso, Moises. 2022 bioRxiv. http://dx.doi.org/10.1101/2022.02.02.477408 https://www.biorxiv.org/content/10.1101/2022.02.02.477408v1
grenedalf: population genetic statistics for the next generation of pool sequencing
Published in arXiv, 2023
Recommended citation: grenedalf: population genetic statistics for the next generation of pool sequencing Lucas Czech, Jeffrey P. Spence, Moisés Expósito-Alonso. arXiv (2023) arXiv:2306.11622 https://arxiv.org/abs/2306.11622
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.